International Journal of Frontiers in Medicine, 2024, 6(12); doi: 10.25236/IJFM.2024.061205.
Yinsong Hu1,2, Haitao Jiao3, Lei Liu1,2, Jinyan Zhao2
1Bioinformatics Research Lab, Chengde Medical University, Chengde, Hebei, China
2College of Basic Medicine, Chengde Medical University, Chengde, Hebei, China
3Clinical Skills Teaching Center, Chengde Medical University, Chengde, Hebei, China
This study using bioinformatics methods to analyze the expression level and prognostic value of ferroptosis driver genes (FDGs) in clear cell renal cell cancer (ccRCC), and provide theoretical basis for the molecular regulatory mechanism and clinical application of FDGs in ccRCC. The Kidney Clear Cell Cancer dataset from the UCSC Xena database was selected, and differentially expressed genes (DEGs) were screened using R software. Functional enrichment analysis was performed on DEGs using the DAVID database. Filter the FDGs in DEGs based on the FDGs in the FerrDb database. Prognostic analysis was performed using Kaplan-Meier method with the survival information of ccRCC patients in UCSC Xena database. This study using TIMER2.0 database to analyze the expression level of FDGs in pan cancer. 252 DEGs were obtained through screening, mainly enriched in biological processes such as transmembrane transport of sodium/potassium/chloride ions, sodium potassium ion homeostasis, renal water homeostasis, and aldosterone regulated sodium reabsorption pathways. By intersecting with the FDGs, three genes were obtained: PVT1, HILPDA, and CDKN2A. They are upregulated in ccRCC tumor tissue. The analysis results of survival suggest that high expression of PVT1 and CDKN2A is relevant to poor prognosis in ccRCC patients. The analysis of pan cancer showed that PVT1 and CDKN2A were highly expressed in bladder cancer, breast cancer and other tumors. Patients of ccRCC with high expression level of PVT1 and CDKN2A have poor prognosis, and both have great importances in the formation and progression of ccRCC, which may become biomarkers for the prognosis of ccRCC.
Bioinformatics; Clear cell renal cell cancer; PVT1; CDKN2A; Prognosis
Yinsong Hu, Haitao Jiao, Lei Liu, Jinyan Zhao. Analysis of Expression Level and Prognostic Value of Ferroptosis Driver Genes in Clear Cell Renal Cell Carcinoma. International Journal of Frontiers in Medicine (2024), Vol. 6, Issue 12: 29-34. https://doi.org/10.25236/IJFM.2024.061205.
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